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Covalent bonds are usually determined by Chime. (CONECT records in the PDB file [see PDB file format] are ignored, except for certain special cases.) Chime assigns covalent bonds to any two atoms having a distance from each other of less than 1.9 ? Here is detailed information about bonds.
Ãâó: www2.uah.es/biomodel/pe/1/protexpl/igloss.htm
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